Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs72905374 | chr6:86277675 | T/C | 5.64E-5 | 402 | 16.87 | 14.13 | 6.72 | KM Plot |
| HNSC | rs73122735 | chr20:44410877 | T/C | 6.51E-7 | 411 | 16.35 | 14.98 | 9.13 | KM Plot |
| HNSC | rs73122739 | chr20:44411764 | C/A | 6.51E-7 | 411 | 16.35 | 14.98 | 9.13 | KM Plot |
| HNSC | rs73122754 | chr20:44417593 | C/A | 6.51E-7 | 411 | 16.35 | 14.98 | 9.13 | KM Plot |
| HNSC | rs73122763 | chr20:44419678 | G/A | 6.51E-7 | 411 | 16.35 | 14.98 | 9.13 | KM Plot |
| HNSC | rs73122768 | chr20:44425747 | C/T | 5.44E-7 | 408 | 16.35 | 14.67 | 9.13 | KM Plot |
| HNSC | rs73124737 | chr20:44440140 | C/T | 4.79E-7 | 410 | 16.35 | 15.3 | 9.13 | KM Plot |
| HNSC | rs73124738 | chr20:44440289 | G/A | 4.79E-7 | 410 | 16.35 | 15.3 | 9.13 | KM Plot |
| HNSC | rs73124741 | chr20:44440737 | T/C | 4.79E-7 | 410 | 16.35 | 15.3 | 9.13 | KM Plot |
| HNSC | rs73124742 | chr20:44441090 | A/G | 4.79E-7 | 410 | 16.35 | 15.3 | 9.13 | KM Plot |
| HNSC | rs73177058 | chr22:46668079 | G/T | 3.51E-6 | 411 | 16.43 | 16.8 | 10.77 | KM Plot |
| HNSC | rs73423882 | chr18:42804331 | C/T | 2.76E-5 | 408 | 16.97 | 13.05 | 4.3 | KM Plot |
| HNSC | rs73423886 | chr18:42807300 | A/G | 2.75E-5 | 409 | 16.92 | 13.05 | 4.3 | KM Plot |
| HNSC | rs73423894 | chr18:42810418 | T/A | 2.94E-5 | 407 | 17.02 | 13.05 | 4.3 | KM Plot |
| HNSC | rs7417503 | chr1:146889114 | C/G | 9.74E-7 | 410 | 16.87 | 14.6 | 3.6 | KM Plot |